In the wiki article, if you scroll down to the parts about the 17th and 18th century there are some examples, all of course pre-WW1.
Another quote (from the article this time, not from that historian) seems to sum it up pretty well: "The status of Jewry in the Ottoman Empire often hinged on the whims of the Sultan. So, for example, while Murad III ordered that the attitude of all non-Muslims should be one of "humility and abjection" and should not "live near Mosques or tall buildings" or own slaves, others were more tolerant.[2]" I think this is the case for most empires (at least those that last a while).
Why do they think the land belongs to them? Why was Israel placed where it was?
Is it not a fairly central belief in Judaism that the holy land was given to them by GHod? Has this not been at least one of the causes for breakdown in peace talks and two-state solution talks? Is this not a belief that at the very least influences the expansionism shown by Israel? An expansionism that is a big part of why this situation seems so locked (at least imo).
It's obviously an oversimplification to blame all conflicts between various religious groups exclusively on religion. But can it possible be right to say that religion is not even one of several causes in this of all cases?
And even in cases where the religious influence is not as clear cut as it is here, even when it might be only "a tool" for those wishing for more power and control it's still at least somewhat to blame as it's a very useful and effective tool. The evolution of just about any conflict can always be said to be more complex, but when the religious aspect of a conflict evolves as a part of that conflict I don't think you can separate that from the dispute itself, at least not entirely. The religious part of the conflict evolves as a part of the conflict, often intensifying it, often developing into a crucial part of the dispute, often fueling the fire and causing atrocities that makes disputes worse. To quote Christopher Hitchens (a man who absolutely destroyed Galloway in a debate imo). "The suicide-bombing community is not absolutely 100 percent religious, but it is pretty nearly 100 percent religious." If this was the only thing religion had contributed in this conflict it would be enough to considered one of many causes behind the seemingly Gordian nature of the situation, it's far from the only thing though.
This is an empire that spanned centuries, and the author picks out localised occurances that are not top down decrees apart from the 'living in tall buildings etc' which applied to all non Muslims and never specifically Jewish people. 1. This pales in significants to the level of hatred and discrimination faced by most minorities, but specifically Jewish people in the west at that time (doesn't mean its right, because its not. But the historical context is important) 2. It is arguable that the way black and other non 'powerful' minorities have been treated by the united states even in the last century (and possibly still today) is worse than anything that ottomans did to any of their minorities pre ww1, (does that mean the Ottomans were perfect... Far from it). 3.top down decrees to the best of my knowledge never targeted the Jewish people of the ottoman empire, in fact Jewish people were given a level of societal autonomy under the milliet system that was only surpaced when Israel was founded. At a time in Europe and Russia when they lived in times of severe and often deadly persecution. 4. Jewish people and other non Muslim minorities rose to the top echelons of the ottoman empire, again unheard of at that time.
Now this is beginning to sound like I am banging the drum for the ottoman empire... I'm not, all I'm trying to show that is that jewish people lived with muslims for centuries and prospered, were given freedom of religion and autonomy that were unheard of that time (I keep saying of that time because it is key here). And therefore if there was any religion or cultural reason for Muslims not to live side by side that would have been exposed, it wasn't and there isn't.